MALDI mass spectra viewing and processing |
Data Explorer by Applied Biosystems |
Analytical Proteomics |
Bone density calculation |
Carestream |
Experimental and Preclinical Imaging |
Flow cytometry data analysis |
Flowjo |
Immunology |
ELISpot experiments analysis |
Biospot |
Immunology |
ELISpot experiments analysis |
Immunospot |
Immunology |
Multispectral imaging |
Carestream |
Experimental and Preclinical Imaging |
ICP-RIE Instrument Control |
PC 2000 (proprietary) by Oxford Instruments |
Microfabrication and Microfluidics |
PECVD Instrument Control |
PC 2000 (proprietary) by Oxford Instruments |
Microfabrication and Microfluidics |
General Instrument Control and Automation |
LabVIEW by National Instruments |
Microfabrication and Microfluidics |
Micorarray and NGS data analysis and visualization |
GeneSpring by Agilent |
Genomics Facility |
Microarray data management |
GeneTraffic by Iobion |
Genomics Facility |
Gene regulation networks and protein interaction map analysis |
PathwayAssist by Ariadne |
Genomics Facility |
Network data integration, analysis, and visualization |
Cytoscape |
Genomics Facility |
Gene expression and SNP microarrays analysis and visualization |
dChip |
Genomics Facility |
Gene map annotator and pathway profiler |
GenMAPP |
Genomics Facility |
High-throughput genomic data analysis and comprehension |
Bioconductor |
Genomics Facility |
Gene expression computation |
RMAExpress |
Genomics Facility |
Photomask design |
AutoCAD by Autodesk |
Microfabrication and Microfluidics |
3D object design |
Inventor by Autodesk |
Microfabrication and Microfluidics |
Computer Aided Manufacturing (CAM) |
HSM by Autodesk |
Microfabrication and Microfluidics |
SEM interface software |
SEMTech Solutions |
Microfabrication and Microfluidics |
Next-generation sequencing data primare analysis |
Illumina RTA |
Genome Sequencing |
Next generation sequencing real-time monitoring and secondary analysis |
Illumina BaseSpace |
Genome Sequencing |
1D,2D,3D-NMR data acquisition, processing and analysis |
Topspin |
Biomolecular NMR |
1D,2D,3D-NMR data processing |
NMRpipe |
Biomolecular NMR |
1D,2D,3D-NMR data analysis |
Sparky |
Biomolecular NMR |
Mojo 3D Printer Control |
Mojo Control Panel; Print Wizard 1.1 by Stratasys |
Microfabrication and Microfluidics |
CNC Mill Control |
Mach3 by ArtSoft |
Microfabrication and Microfluidics |
Microscope Video and Still Image Capture |
2.2 by Capture IC Imaging |
Microfabrication and Microfluidics |
Device Modeling Software |
COMSOL Multiphysics 5.0 |
Microfabrication and Microfluidics |
MS data acquisition, analysis, managing, sharing |
MassLynx, Biopharmalynx, ProteinLynx PLGS by Waters |
Analytical Proteomics |
Database search, protein sequence mapping |
Mascot Server by Matrix Science |
Analytical Proteomics |
De novo sequencing for identifying novel peptides of unsequenced organisms |
PEAKS by Bioinformatics Solutions |
Analytical Proteomics |
FPGA Development |
Xilinx ISE Design Suite 14 |
Instrumentation Design |
Electronics CAD |
Eagle Electronics Design Suite 6 |
Instrumentation Design |
Graphical user interface development |
Microsoft Visual Studio |
Instrumentation Design |
Mechanical CAD |
AutoCad, AutoDesk Inventor Professional |
Instrumentation Design |
Drawing CAD package |
Corel Graphics Suite, Adobe Creative Suite |
Instrumentation Design |
Microcontroller Development Systems |
Various |
Instrumentation Design |
Statistical analysis of protein/peptide identifications, data sharing |
Scaffold by Proteome Software |
Analytical Proteomics |
Proteomics data raw file processing and search |
XCalibur & Proteome Discoverer by Thermo Fisher Scientific |
Analytical Proteomics |
Chemical database |
JChem by ChemAxon |
CMLD |
Next generation sequencing data visualization and analysis |
CLC Genomics Workbench |
Applied Bioinformatics |
Comprehensive platform for drug discovery and protein/molecular modeling and simulation |
MOE by Chemical Computing Group |
Applied Bioinformatics |
Advanced data analysis and visualization (bioinformatics and statistics modules available) |
MATLAB by MathWorks |
Applied Bioinformatics |
Genomic expression data visualization and analysis |
GeneSpring by Agilent Technologies |
Applied Bioinformatics |
Biological sequence manipulation |
DS Gene by Accelrys |
Applied Bioinformatics |
Next-generation sequencing data analysis and visualization |
CLC Genomics Workbench |
Genomics and Bioinformatics |
X-ray diffraction data processing |
XDS |
Protein Structure Lab |
Graphical interface for XDS |
XDSAPP |
Protein Structure Lab |
Macromolecule diffraction data processing |
MOSFLM |
Protein Structure Lab |
X-ray diffraction data processing |
HKL-2000 |
Protein Structure Lab |
X-ray diffraction data processing |
d*TREK by Rigaku |
Protein Structure Lab |
Automated data processing using XDS |
autoPROC |
Protein Structure Lab |
Automated data processing using XDS or Moslfm |
Xia2 |
Protein Structure Lab |
Macromolecular x-ray crystallography suite |
CCP4 |
Protein Structure Lab |
Macromolecular x-ray crystallography suite |
Phenix |
Protein Structure Lab |
Molecular replacement |
EPMR |
Protein Structure Lab |
Molecular replacement |
Phaser |
Protein Structure Lab |
Molecular replacement |
MolRep |
Protein Structure Lab |
Experimental phasing |
Shelx C/D/E |
Protein Structure Lab |
Graphical Interface for Shelx C/D/E |
HKL2MAP |
Protein Structure Lab |
Macromolecular structure refinement |
BUSTER |
Protein Structure Lab |
Macromolecular structure refinement |
Refmac |
Protein Structure Lab |
Macromolecular model building |
Coot |
Protein Structure Lab |
Macromolecular model building and refinement-automated |
Arp/wARP |
Protein Structure Lab |
Macromolecular model building and refinement-automated |
Buccaneer |
Protein Structure Lab |
Preparation of publication quality graphics and structure analysis |
CCP4mg |
Protein Structure Lab |
NMR data acquisition and processing |
Bruker Topspin |
Nuclear Magnetic Resonance |
NMR data processing |
ACD NMR by ACD/Labs |
Nuclear Magnetic Resonance |
Molecular structure determination |
Xplor-NIH |
Nuclear Magnetic Resonance |
NMR data processing, analysis, managing and reporting |
MestreNova by Mestrelab |
Nuclear Magnetic Resonance |
Molecular dynamics force field simulator |
AMBER |
Molecular Graphics & Modeling |
MacroModel |
Schrodinger 5 |
Molecular Graphics & Modeling |
Macromolecular simulations |
CHARMM |
Molecular Graphics & Modeling |
Molecular surface calculator |
DMS |
Molecular Graphics & Modeling |
Binding-modes of small molecules |
DOCK |
Molecular Graphics & Modeling |
Molecular electronic structures calculator |
GAMESS |
Molecular Graphics & Modeling |
Electronic structure modeling |
Gaussian |
Molecular Graphics & Modeling |
Protein docking |
GRAMM |
Molecular Graphics & Modeling |
Molecular dynamics |
LAMMPS |
Molecular Graphics & Modeling |
Comprehensive platform for drug discovery and protein/molecular modeling and simulation |
MOE by Chemical Computing Group |
Molecular Graphics & Modeling |
Computational chemistry tools |
NWChem |
Molecular Graphics & Modeling |
Protein binding site prediction |
PASS by Computational Chemistry List |
Molecular Graphics & Modeling |
Molecular structure cavity detection |
VOIDOO by Uppsala Software Factory |
Molecular Graphics & Modeling |
Graphical molecular modeling |
Cerius 2 by Accelrys |
Molecular Graphics & Modeling |
Repository of experimentally determined organic and metal-organic crystal structures |
Cambridge Crystallographic Database by CCDC |
Molecular Graphics & Modeling |
Chemistry computation, management, analysis and visualization system |
CACTVS |
Molecular Graphics & Modeling |
Molecular structure information interchange hub |
Babel |
Molecular Graphics & Modeling |
Small molecule binding prediction tool |
AutoDock |
Molecular Graphics & Modeling |
Graphing tool |
Gnuplot |
Molecular Graphics & Modeling |
Molecular biology and bioinformatics analysis |
EMBOSS |
Molecular Graphics & Modeling |
Offline processing and analysis of NMR spectra |
Felix by Accelrys |
Molecular Graphics & Modeling |
Molecular visualization |
gOpenMol |
Molecular Graphics & Modeling |
2D plotting tool |
Grace |
Molecular Graphics & Modeling |
Biological molecule visualization |
Insight II by Accelrys |
Molecular Graphics & Modeling |
Intermolecular interactions library |
IsoStar by CCDC |
Molecular Graphics & Modeling |
Comparative protein structure modelling |
MODELLER |
Molecular Graphics & Modeling |
Molecular and electronic structure visualization |
MOLDEN |
Molecular Graphics & Modeling |
Molecular visualization |
Molekel |
Molecular Graphics & Modeling |
Molecular visualization- large biomolecular systems using 3-D graphics and built-in scripting |
VMD |
Molecular Graphics & Modeling |
Molecular graphics- 3-D structures of biological macromolecules |
MolMol |
Molecular Graphics & Modeling |
Molecular graphics- 3-D structures |
MolScript |
Molecular Graphics & Modeling |
Multiple protein sequence analysis |
MPSA |
Molecular Graphics & Modeling |
Molecular visualization |
PyMOL |
Molecular Graphics & Modeling |
Molecular visualization |
RasMol |
Molecular Graphics & Modeling |
Comparative protein modeling |
Swiss-PdbViewer |
Molecular Graphics & Modeling |
Molecular modeling from sequence through lead optimization |
SYBYL by Tripos |
Molecular Graphics & Modeling |
Protein fold recognition |
Threader |
Molecular Graphics & Modeling |
Computational structural biology |
X-PLOR |
Molecular Graphics & Modeling |
Chemical drawing package |
ChemSketch by ACD |
Molecular Graphics & Modeling |
Protein molecule modeling and graphics |
MOLDA |
Molecular Graphics & Modeling |
Chemical database |
JChem by ChemAxon |
Molecular Graphics & Modeling |
Chemical structures drawing tools |
Marvin by ChemAxon |
Molecular Graphics & Modeling |
Grid computing database |
Oracle 10g |
Molecular Graphics & Modeling |
Molecular structural analysis of large biomolecular systems |
O |
Molecular Graphics & Modeling |
High throughput screening data management and analysis |
K-Screen by Kansas University |
High Throughput Screening |
Image analysis |
ImageJ by NIH |
Microscopy and Analytical Imaging |
Image processing and data analysis |
Slidebook by 3i |
Microscopy and Analytical Imaging |
Image analysis |
CellProfiler |
Microscopy and Analytical Imaging |
Data analysis |
CellProfiler Analyst |
Microscopy and Analytical Imaging |
Image analysis |
ImageQuant by GE Healthcare Life Sciences |
Microscopy and Analytical Imaging |
2D DIGE analysis |
Progenesis PG 220 by Nonlinear Dynamics |
Microscopy and Analytical Imaging |
Data analysis, high dimensional, non-linear, complex |
Visumap |
Microscopy and Analytical Imaging |
Image and spectrum acquisition and analysis |
TIA (TEM Image and Analysis) |
Microscopy and Analytical Imaging |
Flow cytometry data analysis |
FlowJo |
Microscopy and Analytical Imaging |
Image data analysis and management |
Attovision by BD Biosciences |
Microscopy and Analytical Imaging |
Image acquisition and processing |
DigitalMicrograph by Gatan |
Microscopy and Analytical Imaging |
In-house macromolecular x-ray data acquisition and processing |
Proteum2 by Bruker |
X-Ray Crystallography |
Macromolecular x-ray data processing; structure solution and refinement |
CCP4 |
X-Ray Crystallography |
Powder diffraction data acquisition and processing |
DiffracPlus.SUITE by Bruker |
X-Ray Crystallography |
Powder diffraction data analysis; identification of crystalline phases |
Eva by Bruker |
X-Ray Crystallography |
Rietveld analysis and structure refinement |
Topas by Bruker |
X-Ray Crystallography |
Small-molecule crystal structure search |
Cambridge Structural Database |
X-Ray Crystallography |
Small-molecule and macromolecular crystal structure solution and refinement |
SHELXTL by Bruker |
X-Ray Crystallography |
Small-molecule structure validation |
Platon |
X-Ray Crystallography |
Small-molecule x-ray diffraction data acquistion and processing |
SMART, SAINT by Bruker |
X-Ray Crystallography |
Small-molecule x-ray diffraction data acquistion and processing |
APEX2 by Bruker |
X-Ray Crystallography |